Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene obtained from the 2022 cruise - Biological Information System for Marine Life

Abstract

SIP Ocean program conducted the research cruises for technical development and data collection of baseline condition in deep-sea environments off Minami Torishima. This data set contains 18S rRNA gene based phylogenetic composition of meiofauna community determined from sediment core samples which have been collected by the Shinkai 6500 in the 2022 cruise of R/V Yokosuka (YK22-08C). The two kinds of PCR primer set have been used for the same sample to compare the phylogenetic composition.

Citation

Inomata K. Kawagucci S. Miwa T. and Yamamoto H (2023) Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene, 18S rRNA gene, physicochemical parameters and meiofauna community, and megafauna occurrence. https://doi.org/10.48518/00018

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Contacts

Kentaro InomataResource Contact, Resource Creator, Metadata Provider

Organization: IDEA ConsultantsPhone: +81-54-622-9553Address: 1334-5 Riemon Yaizu-shi Shizuoka 421-0212 JapanHome Page: Email: inm22253@ideacon.co.jp

Shinsuke KawagucciResource Contact, Resource Creator, Metadata Provider

Organization: JAMSTECPhone: +81-46-867-9743Address: 2-15 Natsushima-cho Yokosuka-shi Kanagawa 237-0061 JapanHome Page: Email: kawagucci@jamstec.go.jp

Hiroyuki YamamotoResource Contact, Resource Creator, Metadata Provider

Organization: JAMSTECPhone: +81-46-867-9580Address: 2-15 Natsushima-cho Yokosuka-shi Kanagawa 237-0061 JapanHome Page: Email: kyama@jamstec.go.jp

Datasets and providers

JAMSTEC

-Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita

-E-library of Deep-sea Images, JAMSTEC

-Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene

-Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene

-Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence

-Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence obtained from the 2022 cruise

-Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community

-Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community obtained from the 2022 cruise

-Image dataset of ophiuroid and other deep sea benthic organisms in 2015 extracted from the survey off Sanriku, Japan, by the research following the Great East Japan Earthquake 2011

-Images in Coral Reef Network WEB System, as a snapshot of fauna and flora around coral reefs in Ryukyu Islands

-JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora

-Marine Biological Sample Database, JAMSTEC

-Metabarcoding data set at the Iheya-Minor Ridge in the Sakai hydrothermal vent field

-Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan

-Occurrence dataset of demersal fish and benthic organisms in the deep-sea off the northeastern coast of Japan, recorded by ROV after the 2011 Earthquake off the Pacific coast of Tohoku

-Species list recorded by baited cameras at deep sea area in Japan

Occurrence records

Occurrence records　→

[Map・Summary]

■Number of record

1,372　

■Record acquisition period

2022/04/24 ~ 2022/05/04

* Date last modified : 2023/07/08

■Record acquisition range

Latitude

22.9966 ~ 23.0629

Longitude

153.8771 ~ 154.4105

Depth

5538 ~ 5642 m

[Environment]

[Registered taxon]

■Number of taxonomy

70Taxonomy

■Number of specimen

21Specimen

Taxon level lower than family :85 %

Taxon level lower than species :21 %

Scientific name list

Displayed result/page

[DNA derived data]

■Number of record

1,372　

Occurrences with DNA derived data :100 %

Occurrence record download

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