Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan - Biological Information System for Marine Life

Abstract

Deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water is monitored. Water samples were derived from the intakes located at 400m depth off Yaizu, Suruga Bay and 811m depth off Akazawa, Sagami Bay in Japan. Identical reads obtained by next generation sequencing were referred to the MitoFish (http://mitofish.aori.u-tokyo.ac.jp/), and more than 3% of the total reads were listed.

Citation

Tsuchida, S., M. Kawato, T. Yoshida, Y. Fujiwara, Y. Nagano, and A. Yabuki. (2021) Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan. Available at https://doi.org/10.48518/00005. Accessed on yyyy-mm-dd.

Literature

Information on literature which is important for understanding data, such as literature which became the basis of the data set, is displayed.

Kawato, M., Yoshida, T., Miya, M., Tsuchida, S., Nagano, Y., Nomura, M., Yabuki, A., Fujiwara, Y. & Fujikura, K. (2021). Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish. MethodsX, 101238. https://www.sciencedirect.com/science/article/pii/S2215016121000315

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License

This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License.

Contacts

Shinji TsuchidaResource Contact, Resource Creator, Metadata Provider

Organization: JAMSTECPhone: +81-46-867-9558Address: 2-15 Natsushima-cho Yokosuka-shi Kanagawa 237-0061 JapanHome Page: Email: tsuchidas@jamstec.go.jp

Datasets and providers

JAMSTEC

-Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita

-E-library of Deep-sea Images, JAMSTEC

-Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene

-Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene

-Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene obtained from the 2022 cruise

-Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence

-Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence obtained from the 2022 cruise

-Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community

-Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community obtained from the 2022 cruise

-Image dataset of ophiuroid and other deep sea benthic organisms in 2015 extracted from the survey off Sanriku, Japan, by the research following the Great East Japan Earthquake 2011

-Images in Coral Reef Network WEB System, as a snapshot of fauna and flora around coral reefs in Ryukyu Islands

-JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora

-Marine Biological Sample Database, JAMSTEC

-Metabarcoding data set at the Iheya-Minor Ridge in the Sakai hydrothermal vent field

-Occurrence dataset of demersal fish and benthic organisms in the deep-sea off the northeastern coast of Japan, recorded by ROV after the 2011 Earthquake off the Pacific coast of Tohoku

-Species list recorded by baited cameras at deep sea area in Japan

Occurrence records

Occurrence records　→

[Map・Summary]

■Number of record

48　

■Record acquisition period

2019/09/25 ~ 2019/09/26

* Date last modified : 2021/03/09

■Record acquisition range

Latitude

34.83885333 ~ 34.8532

Longitude

138.3573167 ~ 139.1364983

Depth

400 ~ 811 m

[Environment]

[Registered taxon]

■Number of taxonomy

32Taxonomy

■Number of specimen

32Specimen

Taxon level lower than family :100 %

Taxon level lower than species :100 %

Scientific name list

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Dataset Name	Record Id
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Date
Time
Depth
Scientific Name
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