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Taxonomic tree
Occurrence records
Dataset
More
About BISMaL
About BISMaL data
日本語
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Show data
Taxonomic tree
Occurrence records
Dataset
More
About BISMaL
About BISMaL data
日本語
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Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan
Abstract
Deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water is monitored. Water samples were derived from the intakes located at 400m depth off Yaizu, Suruga Bay and 811m depth off Akazawa, Sagami Bay in Japan. Identical reads obtained by next generation sequencing were referred to the MitoFish (http://mitofish.aori.u-tokyo.ac.jp/), and more than 3% of the total reads were listed.
Citation
Tsuchida, S., M. Kawato, T. Yoshida, Y. Fujiwara, Y. Nagano, and A. Yabuki. (2021) Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan. Available at https://doi.org/10.48518/00005. Accessed on yyyy-mm-dd.
Literature
Information on literature which is important for understanding data, such as literature which became the basis of the data set, is displayed.
Kawato, M., Yoshida, T., Miya, M., Tsuchida, S., Nagano, Y., Nomura, M., Yabuki, A., Fujiwara, Y. & Fujikura, K. (2021). Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish. MethodsX, 101238. https://www.sciencedirect.com/science/article/pii/S2215016121000315
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License
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Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License
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Contacts
Shinji Tsuchida
Resource Contact, Resource Creator, Metadata Provider
Organization: JAMSTEC
Phone: +81-46-867-9558
Address: 2-15 Natsushima-cho Yokosuka-shi Kanagawa 237-0061 Japan
Home Page:
Email: tsuchidas@jamstec.go.jp
Datasets and providers
JAMSTEC
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Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita
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E-library of Deep-sea Images, JAMSTEC
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Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene
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Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene
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Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene obtained from the 2022 cruise
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Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence
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Environmental baseline data in abyssal plain off Minami Torishima based on megafauna occurrence obtained from the 2022 cruise
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Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community
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Environmental baseline data in abyssal plain off Minami Torishima based on physicochemical parameters and meiofauna community obtained from the 2022 cruise
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Image dataset of ophiuroid and other deep sea benthic organisms in 2015 extracted from the survey off Sanriku, Japan, by the research following the Great East Japan Earthquake 2011
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Images in Coral Reef Network WEB System, as a snapshot of fauna and flora around coral reefs in Ryukyu Islands
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JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora
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Marine Biological Sample Database, JAMSTEC
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Metabarcoding data set at the Iheya-Minor Ridge in the Sakai hydrothermal vent field
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Occurrence dataset of demersal fish and benthic organisms in the deep-sea off the northeastern coast of Japan, recorded by ROV after the 2011 Earthquake off the Pacific coast of Tohoku
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Species list recorded by baited cameras at deep sea area in Japan
Occurrence records
Occurrence records →
[Map・Summary]
■
Number of record
48
■
Record acquisition period
2019/09/25 ~ 2019/09/26
* Date last modified : 2021/03/09
■
Record acquisition range
Latitude
34.83885333 ~ 34.8532
Longitude
138.3573167 ~ 139.1364983
Depth
400 ~ 811 m
[Environment]
[Registered taxon]
■
Number of taxonomy
32
Taxonomy
■
Number of specimen
32
Specimen
Taxon level lower than family :
100
%
Taxon level lower than species :
100
%
Scientific name list
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10
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100
500
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