Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan
Abstract
Deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water is monitored. Water samples were derived from the intakes located at 400m depth off Yaizu, Suruga Bay and 811m depth off Akazawa, Sagami Bay in Japan. Identical reads obtained by next generation sequencing were referred to the MitoFish (http://mitofish.aori.u-tokyo.ac.jp/), and more than 3% of the total reads were listed.
Citation
Tsuchida, S., M. Kawato, T. Yoshida, Y. Fujiwara, Y. Nagano, and A. Yabuki. (2021) Monitoring of deep-sea fish diversity using environmental DNA metabarcoding of pumped deep-sea water in Sagami and Suruga Bays, Japan. Available at https://doi.org/10.48518/00005. Accessed on yyyy-mm-dd.
Literature
Information on literature which is important for understanding data, such as literature which became the basis of the data set, is displayed.
Kawato, M., Yoshida, T., Miya, M., Tsuchida, S., Nagano, Y., Nomura, M., Yabuki, A., Fujiwara, Y. & Fujikura, K. (2021). Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish. MethodsX, 101238. https://www.sciencedirect.com/science/article/pii/S2215016121000315
Contacts
Shinji TsuchidaResource Contact, Resource Creator, Metadata Provider
Organization: JAMSTECPhone: +81-46-867-9558Address: 2-15 Natsushima-cho Yokosuka-shi Kanagawa 237-0061 JapanHome Page: Email: tsuchidas@jamstec.go.jp
Datasets and providers
JAMSTEC
Occurrence records
Occurrence records →
[Map・Summary]
Number of record
48 
Record acquisition period
2019/09/25 ~ 2019/09/26
* Date last modified : 2021/03/09
Record acquisition range
Latitude
34.83885333 ~ 34.8532
Longitude
138.3573167 ~ 139.1364983
Depth
400 ~ 811 m
[Environment]
[Registered taxon]
Number of taxonomy
32Taxonomy
Number of specimen
32Specimen
Taxon level lower than family :100 %
Taxon level lower than species :100 %
Scientific name list
Displayed result
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